> ## Documentation Index
> Fetch the complete documentation index at: https://docs.monolex.ai/llms.txt
> Use this file to discover all available pages before exploring further.

# PHASE3 MASTER TRACKER

# Phase 3 Documentation Conversion Master Tracker

**Date**: 2026-01-18
**Status**: In Progress
**Total Phase 2 Source Files**: 118 (excluding niia-consciousness)
**Target Workspace**: `/Users/macbook/Projects/monolex/monolex-docs-draft/`

***

## Session Continuity Instructions

```
┌─────────────────────────────────────────────────────────────────┐
│  AT EVERY SESSION START:                                        │
├─────────────────────────────────────────────────────────────────┤
│                                                                 │
│  1. Read this file FIRST                                        │
│     /Users/macbook/Projects/monolex/monolex-docs-draft/         │
│     PHASE3-MASTER-TRACKER.md                                    │
│                                                                 │
│  2. Check completed items in checklist below                    │
│                                                                 │
│  3. Continue from next pending item                             │
│                                                                 │
│  4. Reference SKILL.md and GLOSSARY.md when converting:         │
│     - SKILL.md: Phase 3 conversion rules                        │
│     - GLOSSARY.md: Term selection guide                         │
│                                                                 │
└─────────────────────────────────────────────────────────────────┘
```

***

## Phase 3 Core Rules Reference

```
┌─────────────────────────────────────────────────────────────────┐
│  PHASE 3 GOLDEN RULES (from SKILL.md)                           │
├─────────────────────────────────────────────────────────────────┤
│                                                                 │
│  CONTENT RATIO:                                                 │
│    Text:    30%                                                 │
│    Diagram: 70% (ASCII art)                                     │
│                                                                 │
│  REMOVE (Implementation details):                               │
│    - cache, buffer, CachedLine                                  │
│    - feed(bytes), hash                                          │
│    - File paths (atomic_state.rs:142)                           │
│    - Code snippets (except user commands)                       │
│    - Internal variable names                                    │
│                                                                 │
│  KEEP (Credibility + SEO):                                      │
│    - Rust, MPSC, Alacritty, Tauri                               │
│    - Unix Socket, WebGL, VTE Parser                             │
│    - ACK, BSU/ESU, SessionActor, DiffHint                       │
│    - Performance numbers (99.95% reduction)                     │
│                                                                 │
│  TEST: "Would grandmother understand this?"                     │
│                                                                 │
└─────────────────────────────────────────────────────────────────┘
```

***

## Term Priority Reference (from GLOSSARY.md)

| Priority      | Terms                                            | Usage        |
| ------------- | ------------------------------------------------ | ------------ |
| Always Use    | Rust, TypeScript, Tauri, GPU Acceleration, WebGL | Every page   |
| Frequently    | Alacritty, VTE, MPSC, Actor Model, PTY, Tokio    | Architecture |
| When Relevant | BSU/ESU, ACK, ANSI, xterm.js, Unix Socket        | Technical    |
| For Depth     | SessionActor, DiffHint, GridWorker, AtomicState  | Deep dive    |
| Brand         | Monokinetics, SMPC, OFAC, Atomic UX              | Philosophy   |

***

## Directory Mapping

| Phase 2 Source               | Phase 3 Target                         | Files |
| ---------------------------- | -------------------------------------- | ----- |
| `monoterm-guide/`            | `terminal/` + `philosophy/`            | 13    |
| `atomic-architecture/`       | `architecture/`                        | 9     |
| `atomic-state/`              | `terminal/`                            | 9     |
| `components/`                | `daemons/` + `database/` + `features/` | 18    |
| `monokinetics-concurrency/`  | `architecture/`                        | 7     |
| `monokinetics-transparency/` | `transparency/`                        | 48    |
| `ux-ai-native/`              | `research/`                            | 9     |
| `architecture-docs/`         | `architecture/`                        | 2     |
| Root files (README, etc.)    | Root                                   | 3     |

***

## Conversion Progress Summary

| Category                  | Total   | Converted | Remaining | Progress |
| ------------------------- | ------- | --------- | --------- | -------- |
| monoterm-guide            | 13      | 8         | 5         | 62%      |
| atomic-architecture       | 9       | 6         | 3         | 67%      |
| atomic-state              | 9       | 4         | 5         | 44%      |
| components                | 18      | 4         | 14        | 22%      |
| monokinetics-concurrency  | 7       | 7         | 0         | 100%     |
| monokinetics-transparency | 48      | 26        | 22        | 54%      |
| ux-ai-native              | 9       | 3         | 6         | 33%      |
| architecture-docs         | 2       | 0         | 2         | 0%       |
| Root                      | 3       | 2         | 1         | 67%      |
| **TOTAL**                 | **118** | **60**    | **58**    | **51%**  |

***

## Full Checklist

### 1. monoterm-guide/ (13 files)

| #  | Source                                | Target                                    | Status       |
| -- | ------------------------------------- | ----------------------------------------- | ------------ |
| 1  | `01-what-is-monoterm.md`              | `terminal/overview.mdx`                   | \[ ] PENDING |
| 2  | `02-atomic-loop.md`                   | `terminal/atomic-loop.mdx`                | \[x] EXISTS  |
| 3  | `03-bsu-esu.md`                       | `terminal/bsu-esu-protocol.mdx`           | \[x] EXISTS  |
| 4  | `04-data-reduction.md`                | `terminal/data-reduction.mdx`             | \[x] EXISTS  |
| 5  | `05-monokinetics.md`                  | `philosophy/monokinetics.mdx`             | \[x] EXISTS  |
| 6  | `06-monokinetic-hermeneutics.md`      | `philosophy/monokinetic-hermeneutics.mdx` | \[x] EXISTS  |
| 7  | `07-monokinetics-and-monolex.md`      | `philosophy/monolex-vision.mdx`           | \[ ] PENDING |
| 8  | `08-monokinetics-and-monoterm.md`     | `architecture/philosophy-to-code.mdx`     | \[x] EXISTS  |
| 9  | `09-cursor-pattern-pseudo-bsu.md`     | `terminal/cursor-pattern.mdx`             | \[ ] PENDING |
| 10 | `09-monokinetics-concurrency.md`      | `architecture/concurrency-patterns.mdx`   | \[x] EXISTS  |
| 11 | `10-ai-cli-framework-pairing.md`      | `research/ai-cli-pairing.mdx`             | \[ ] PENDING |
| 12 | `11-monoterm-compatibility-matrix.md` | `terminal/compatibility.mdx`              | \[ ] PENDING |
| 13 | `README.md`                           | (index only)                              | \[x] SKIP    |

### 2. atomic-architecture/ (9 files)

| #  | Source                             | Target                                     | Status       |
| -- | ---------------------------------- | ------------------------------------------ | ------------ |
| 14 | `01-overview.md`                   | `architecture/overview.mdx`                | \[x] EXISTS  |
| 15 | `02-component-architecture.md`     | `architecture/components.mdx`              | \[ ] PENDING |
| 16 | `03-ack-gate-flow-control.md`      | `architecture/ack-flow-control.mdx`        | \[ ] PENDING |
| 17 | `04-epoch-synchronization.md`      | `architecture/epoch-sync.mdx`              | \[ ] PENDING |
| 18 | `05-xterm-as-renderer.md`          | `architecture/xterm-renderer.mdx`          | \[ ] PENDING |
| 19 | `06-backend-rendering-patterns.md` | `architecture/rendering-patterns.mdx`      | \[ ] PENDING |
| 20 | `07-simulation-vs-presentation.md` | `architecture/simulation-presentation.mdx` | \[ ] PENDING |
| 21 | `08-dirty-tracking-strategies.md`  | `architecture/dirty-tracking.mdx`          | \[ ] PENDING |
| 22 | `README.md`                        | (index only)                               | \[x] SKIP    |

### 3. atomic-state/ (9 files)

| #  | Source                       | Target                                | Status       |
| -- | ---------------------------- | ------------------------------------- | ------------ |
| 23 | `01-overview.md`             | `terminal/atomic-state.mdx`           | \[x] EXISTS  |
| 24 | `01-what-is-atomic-state.md` | `terminal/atomic-state-intro.mdx`     | \[ ] PENDING |
| 25 | `02-data-flow.md`            | `terminal/data-flow.mdx`              | \[ ] PENDING |
| 26 | `02-how-it-works.md`         | `terminal/atomic-state-mechanics.mdx` | \[ ] PENDING |
| 27 | `03-buffer-model.md`         | `terminal/buffer-model.mdx`           | \[ ] PENDING |
| 28 | `03-performance-benefits.md` | `terminal/performance.mdx`            | \[ ] PENDING |
| 29 | `04-diff-rendering.md`       | `terminal/diff-rendering.mdx`         | \[ ] PENDING |
| 30 | `04-troubleshooting.md`      | `guides/troubleshooting.mdx`          | \[x] EXISTS  |
| 31 | `README.md`                  | (index only)                          | \[x] SKIP    |

### 4. components/ (18 files)

| #  | Source                           | Target                               | Status       |
| -- | -------------------------------- | ------------------------------------ | ------------ |
| 32 | `ch1-pty-daemon.md`              | `terminal/pty-daemon.mdx`            | \[x] EXISTS  |
| 33 | `ch3-pty-log.md`                 | `daemons/pty-log.mdx`                | \[ ] PENDING |
| 34 | `ch4-atomic-term-ime.md`         | `features/ime-cjk-support.mdx`       | \[x] EXISTS  |
| 35 | `ch5-niia-watcher.md`            | `daemons/niia-watcher.mdx`           | \[x] EXISTS  |
| 36 | `ch6-variable-md.md`             | `features/variable-md.mdx`           | \[ ] PENDING |
| 37 | `ch7-database-architecture.md`   | `database/overview.mdx`              | \[x] EXISTS  |
| 38 | `ch8-complex-relations.md`       | `database/relations.mdx`             | \[ ] PENDING |
| 39 | `ch9-file-db-mapping.md`         | `database/file-mapping.mdx`          | \[ ] PENDING |
| 40 | `ch10-work-wiki-diff.md`         | `database/work-wiki-diff.mdx`        | \[ ] PENDING |
| 41 | `ch11-module-db-graph.md`        | `database/module-graph.mdx`          | \[ ] PENDING |
| 42 | `ch12-unified-connection-map.md` | `database/connection-map.mdx`        | \[ ] PENDING |
| 43 | `ch13-terminal-scrollbar.md`     | `features/scrollbar.mdx`             | \[ ] PENDING |
| 44 | `ch19-design-patterns.md`        | `architecture/design-patterns.mdx`   | \[ ] PENDING |
| 45 | `db-atomic-term.md`              | `database/atomic-term.mdx`           | \[ ] PENDING |
| 46 | `db-niia-watcher.md`             | `database/niia-watcher.mdx`          | \[ ] PENDING |
| 47 | `db-onit.md`                     | `database/onit.mdx`                  | \[ ] PENDING |
| 48 | `db-session.md`                  | `database/session.mdx`               | \[ ] PENDING |
| 49 | `db-work-wiki-diff.md`           | `database/work-wiki-diff-schema.mdx` | \[ ] PENDING |

### 5. monokinetics-concurrency/ (7 files)

| #   | Source                                                | Target                                  | Status      |
| --- | ----------------------------------------------------- | --------------------------------------- | ----------- |
| 50  | `monokinetics-concurrency-philosophy.md`              | `philosophy/concurrency-philosophy.mdx` | \[x] EXISTS |
| 51  | `monokinetics-concurrency-00-five-pattern-synergy.md` | `architecture/five-patterns.mdx`        | \[x] EXISTS |
| 52  | `monokinetics-concurrency-01-actor-over-mutex.md`     | `architecture/actor-pattern.mdx`        | \[x] EXISTS |
| 53  | `monokinetics-concurrency-02-actor-ack-synergy.md`    | `architecture/actor-ack.mdx`            | \[x] EXISTS |
| 54  | `monokinetics-concurrency-03-atomicstate-absorber.md` | `architecture/state-absorber.mdx`       | \[x] EXISTS |
| 55a | `monokinetics-concurrency-04-passthrough-survival.md` | `architecture/passthrough-survival.mdx` | \[x] EXISTS |
| 55b | `monokinetics-concurrency-05-oneshot-timeout.md`      | `architecture/response-timeout.mdx`     | \[x] EXISTS |

### 6. monokinetics-transparency/ (48 files)

6.1 Core & Overview (3 files)

| #  | Source                        | Target                      | Status       |
| -- | ----------------------------- | --------------------------- | ------------ |
| 55 | `00-overview.md`              | `transparency/overview.mdx` | \[ ] PENDING |
| 56 | `README.md`                   | (index only)                | \[x] SKIP    |
| 57 | `01-work-wiki-core/README.md` | (index only)                | \[x] SKIP    |

6.2 Work Wiki Core (4 files)

| #  | Source                                                          | Target                                | Status      |
| -- | --------------------------------------------------------------- | ------------------------------------- | ----------- |
| 58 | `01-work-wiki-core/chapter-01-work-wiki-system-overview.md`     | `transparency/core/overview.mdx`      | \[x] EXISTS |
| 59 | `01-work-wiki-core/chapter-02-visualization-components.md`      | `transparency/core/visualization.mdx` | \[x] EXISTS |
| 60 | `01-work-wiki-core/chapter-03-backend-data-model.md`            | `transparency/core/data-model.mdx`    | \[x] EXISTS |
| 61 | `01-work-wiki-core/chapter-04-transparency-loop-integration.md` | `transparency/core/integration.mdx`   | \[x] EXISTS |

6.3 Git Viewers (15 files)

| #  | Source                                                         | Target                                              | Status       |
| -- | -------------------------------------------------------------- | --------------------------------------------------- | ------------ |
| 62 | `02-git-viewers/README.md`                                     | (index only)                                        | \[x] SKIP    |
| 63 | `02-git-viewers/chapter-05-git-base-viewer-qed.md`             | `transparency/git-viewers/base-viewer.mdx`          | \[x] EXISTS  |
| 64 | `02-git-viewers/chapter-06-dashboard-viewers-qed.md`           | `transparency/git-viewers/dashboard.mdx`            | \[x] EXISTS  |
| 65 | `02-git-viewers/chapter-07-wiki-base-infrastructure-qed.md`    | `transparency/git-viewers/wiki-base.mdx`            | \[x] EXISTS  |
| 66 | `02-git-viewers/chapter-08-blame-viewer-qed.md`                | `transparency/git-viewers/blame-stash.mdx`          | \[x] EXISTS  |
| 67 | `02-git-viewers/chapter-09-stash-reflog-qed.md`                | `transparency/git-viewers/stash-reflog.mdx`         | \[ ] PENDING |
| 68 | `02-git-viewers/chapter-10-diff-viewer-qed.md`                 | `transparency/git-viewers/diff-commit.mdx`          | \[x] EXISTS  |
| 69 | `02-git-viewers/chapter-11-commit-graph-architecture-qed.md`   | `transparency/git-viewers/commit-graph.mdx`         | \[ ] PENDING |
| 70 | `02-git-viewers/chapter-12-filename-parser-ipc-qed.md`         | `transparency/git-viewers/parser-prove.mdx`         | \[x] EXISTS  |
| 71 | `02-git-viewers/chapter-13-prove-viewer-status-qed.md`         | `transparency/git-viewers/prove-status.mdx`         | \[ ] PENDING |
| 72 | `02-git-viewers/chapter-14-research-viewer-gittab-qed.md`      | `transparency/git-viewers/research-gittab.mdx`      | \[ ] PENDING |
| 73 | `02-git-viewers/chapter-15-frontmatter-parsing-qed.md`         | `transparency/git-viewers/research-frontmatter.mdx` | \[x] EXISTS  |
| 74 | `02-git-viewers/chapter-16-cross-viewer-integration-qed.md`    | `transparency/git-viewers/integration-heatmap.mdx`  | \[x] EXISTS  |
| 75 | `02-git-viewers/chapter-17-heatmap-color-qed.md`               | `transparency/git-viewers/heatmap-color.mdx`        | \[ ] PENDING |
| 76 | `02-git-viewers/chapter-18-final-integration-synthesis-qed.md` | `transparency/git-viewers/synthesis.mdx`            | \[ ] PENDING |

6.4 Extension (3 files)

| #  | Source                                                | Target                                      | Status      |
| -- | ----------------------------------------------------- | ------------------------------------------- | ----------- |
| 77 | `03-extension/README.md`                              | (index only)                                | \[x] SKIP   |
| 78 | `03-extension/chapter-19-extension-architecture.md`   | `transparency/extension/architecture.mdx`   | \[x] EXISTS |
| 79 | `03-extension/chapter-20-extension-implementation.md` | `transparency/extension/implementation.mdx` | \[x] EXISTS |

6.5 Wiki Viewers (11 files)

| #  | Source                                                         | Target                                           | Status       |
| -- | -------------------------------------------------------------- | ------------------------------------------------ | ------------ |
| 80 | `04-wiki-viewers/README.md`                                    | (index only)                                     | \[x] SKIP    |
| 81 | `04-wiki-viewers/chapter-21-wiki-onit-viewer-overview.md`      | `transparency/wiki-viewers/onit-overview.mdx`    | \[x] EXISTS  |
| 82 | `04-wiki-viewers/chapter-22-wiki-onit-viewer-data-model.md`    | `transparency/wiki-viewers/onit-data.mdx`        | \[ ] PENDING |
| 83 | `04-wiki-viewers/chapter-23-wiki-onit-viewer-render.md`        | `transparency/wiki-viewers/onit-render.mdx`      | \[x] EXISTS  |
| 84 | `04-wiki-viewers/chapter-24-wiki-onit-viewer-interaction.md`   | `transparency/wiki-viewers/onit-interaction.mdx` | \[ ] PENDING |
| 85 | `04-wiki-viewers/chapter-25-wiki-onit-viewer-state.md`         | `transparency/wiki-viewers/onit-state.mdx`       | \[x] EXISTS  |
| 86 | `04-wiki-viewers/chapter-26-wiki-prepare-viewer-overview.md`   | `transparency/wiki-viewers/prepare-viewer.mdx`   | \[x] EXISTS  |
| 87 | `04-wiki-viewers/chapter-27-wiki-prepare-viewer-data.md`       | `transparency/wiki-viewers/prepare-data.mdx`     | \[ ] PENDING |
| 88 | `04-wiki-viewers/chapter-28-wiki-prepare-viewer-render.md`     | `transparency/wiki-viewers/prepare-render.mdx`   | \[ ] PENDING |
| 89 | `04-wiki-viewers/chapter-29-wiki-prepare-viewer-navigation.md` | `transparency/wiki-viewers/prepare-nav.mdx`      | \[ ] PENDING |
| 90 | `04-wiki-viewers/chapter-30-onit-prepare-integration.md`       | `transparency/wiki-viewers/onit-prepare.mdx`     | \[x] EXISTS  |

6.6 Git Backend (4 files)

| #  | Source                                                  | Target                                        | Status      |
| -- | ------------------------------------------------------- | --------------------------------------------- | ----------- |
| 91 | `05-git-rs-backend/README.md`                           | (index only)                                  | \[x] SKIP   |
| 92 | `05-git-rs-backend/chapter-31-git-rs-overview.md`       | `transparency/git-backend/overview.mdx`       | \[x] EXISTS |
| 93 | `05-git-rs-backend/chapter-32-git-rs-implementation.md` | `transparency/git-backend/implementation.mdx` | \[x] EXISTS |
| 94 | `05-git-rs-backend/chapter-33-git-rs-work-wiki.md`      | `transparency/git-backend/work-wiki.mdx`      | \[x] EXISTS |

6.7 Commit Graph Upgrade (5 files)

| #  | Source                                                       | Target                                         | Status       |
| -- | ------------------------------------------------------------ | ---------------------------------------------- | ------------ |
| 95 | `06-commit-graph-upgrade/README.md`                          | (index only)                                   | \[x] SKIP    |
| 96 | `06-commit-graph-upgrade/chapter-34-commit-graph-current.md` | `transparency/commit-graph/current-state.mdx`  | \[x] EXISTS  |
| 97 | `06-commit-graph-upgrade/chapter-35-upgrade-requirements.md` | `transparency/commit-graph/upgrade-plan.mdx`   | \[x] EXISTS  |
| 98 | `06-commit-graph-upgrade/chapter-36-upgrade-plans.md`        | `transparency/commit-graph/implementation.mdx` | \[ ] PENDING |
| 99 | `06-commit-graph-upgrade/chapter-37-upgrade-impact.md`       | `transparency/commit-graph/impact.mdx`         | \[ ] PENDING |

6.8 NIIA Watcher (3 files)

| #   | Source                                                    | Target                                       | Status      |
| --- | --------------------------------------------------------- | -------------------------------------------- | ----------- |
| 100 | `07-niia-watcher/README.md`                               | (index only)                                 | \[x] SKIP   |
| 101 | `07-niia-watcher/chapter-38-niia-watcher-architecture.md` | `transparency/file-watcher/architecture.mdx` | \[x] EXISTS |
| 102 | `07-niia-watcher/chapter-39-niia-watcher-integration.md`  | `transparency/file-watcher/integration.mdx`  | \[x] EXISTS |

### 7. ux-ai-native/ (9 files)

| #   | Source                                                  | Target                               | Status       |
| --- | ------------------------------------------------------- | ------------------------------------ | ------------ |
| 103 | `50-STEP-ANALYSIS-PLAN.md`                              | `research/analysis-methodology.mdx`  | \[ ] PENDING |
| 104 | `56-SOURCE-CODE-DEEP-ANALYSIS.md`                       | `research/source-analysis.mdx`       | \[ ] PENDING |
| 105 | `59-NEW-PROBLEM-CATEGORY.md`                            | `research/ai-native-terminal.mdx`    | \[x] EXISTS  |
| 106 | `60-TWO-SCENARIOS-GAME-ANALOGY.md`                      | `research/game-analogy.mdx`          | \[ ] PENDING |
| 107 | `61-AI-NATIVE-TERMINAL-DIAGRAMS.md`                     | `research/architecture-diagrams.mdx` | \[ ] PENDING |
| 108 | `62-AI-NATIVE-TERMINAL-GIANTS-QUOTE.md`                 | `research/giants-quote.mdx`          | \[ ] PENDING |
| 109 | `63-AI-NATIVE-TERMINAL-ARCHITECTURE-SUCCESS-FACTORS.md` | `research/success-factors.mdx`       | \[ ] PENDING |
| 110 | `64-AI-NATIVE-TERMINAL-PRIOR-ART.md`                    | `research/prior-art.mdx`             | \[ ] PENDING |
| 111 | `README.md`                                             | (index only)                         | \[x] SKIP    |

### 8. architecture-docs/ (2 files)

| #   | Source                    | Target                             | Status       |
| --- | ------------------------- | ---------------------------------- | ------------ |
| 112 | `02-data-flow.md`         | `architecture/data-flow.mdx`       | \[ ] PENDING |
| 113 | `ARCHITECTURE-VERSION.md` | `architecture/version-history.mdx` | \[ ] PENDING |

### 9. Root Files (3 files)

| #   | Source                   | Target             | Status      |
| --- | ------------------------ | ------------------ | ----------- |
| 114 | `README.md`              | `introduction.mdx` | \[x] EXISTS |
| 115 | `CLASSIFICATION-MAP.md`  | (internal only)    | \[x] SKIP   |
| 116 | `RESTRUCTURE-MAPPING.md` | (internal only)    | \[x] SKIP   |

***

## Batch Assignment for Parallel Conversion

### Batch A: Architecture Deep-Dive (7 files)

Files: #15, #16, #17, #18, #19, #20, #21

```
atomic-architecture/02-component-architecture.md → architecture/components.mdx
atomic-architecture/03-ack-gate-flow-control.md → architecture/ack-flow-control.mdx
atomic-architecture/04-epoch-synchronization.md → architecture/epoch-sync.mdx
atomic-architecture/05-xterm-as-renderer.md → architecture/xterm-renderer.mdx
atomic-architecture/06-backend-rendering-patterns.md → architecture/rendering-patterns.mdx
atomic-architecture/07-simulation-vs-presentation.md → architecture/simulation-presentation.mdx
atomic-architecture/08-dirty-tracking-strategies.md → architecture/dirty-tracking.mdx
```

### Batch B: AtomicState Deep-Dive (5 files)

Files: #24, #25, #26, #27, #28, #29

```
atomic-state/01-what-is-atomic-state.md → terminal/atomic-state-intro.mdx
atomic-state/02-data-flow.md → terminal/data-flow.mdx
atomic-state/02-how-it-works.md → terminal/atomic-state-mechanics.mdx
atomic-state/03-buffer-model.md → terminal/buffer-model.mdx
atomic-state/03-performance-benefits.md → terminal/performance.mdx
atomic-state/04-diff-rendering.md → terminal/diff-rendering.mdx
```

### Batch C: Concurrency Philosophy (7 files) ✅ COMPLETE

Files: #50, #51, #52, #53, #54, #55a, #55b

```
monokinetics-concurrency/monokinetics-concurrency-philosophy.md → philosophy/concurrency-philosophy.mdx ✅
monokinetics-concurrency/00-five-pattern-synergy.md → architecture/five-patterns.mdx ✅
monokinetics-concurrency/01-actor-over-mutex.md → architecture/actor-pattern.mdx ✅
monokinetics-concurrency/02-actor-ack-synergy.md → architecture/actor-ack.mdx ✅
monokinetics-concurrency/03-atomicstate-absorber.md → architecture/state-absorber.mdx ✅
monokinetics-concurrency/04-passthrough-survival.md → architecture/passthrough-survival.mdx ✅
monokinetics-concurrency/05-oneshot-timeout.md → architecture/response-timeout.mdx ✅
```

### Batch D: Components & Features (5 files)

Files: #33, #36, #43, #44, #1

```
components/ch3-pty-log.md → daemons/pty-log.mdx
components/ch6-variable-md.md → features/variable-md.mdx
components/ch13-terminal-scrollbar.md → features/scrollbar.mdx
components/ch19-design-patterns.md → architecture/design-patterns.mdx
monoterm-guide/01-what-is-monoterm.md → terminal/overview.mdx
```

### Batch E: Database Documentation (8 files)

Files: #38, #39, #40, #41, #42, #45, #46, #47, #48, #49

```
components/ch8-complex-relations.md → database/relations.mdx
components/ch9-file-db-mapping.md → database/file-mapping.mdx
components/ch10-work-wiki-diff.md → database/work-wiki-diff.mdx
components/ch11-module-db-graph.md → database/module-graph.mdx
components/ch12-unified-connection-map.md → database/connection-map.mdx
components/db-atomic-term.md → database/atomic-term.mdx
components/db-niia-watcher.md → database/niia-watcher.mdx
components/db-onit.md → database/onit.mdx
components/db-session.md → database/session.mdx
components/db-work-wiki-diff.md → database/work-wiki-diff-schema.mdx
```

### Batch F: AI-Native Research (8 files)

Files: #103, #104, #106, #107, #108, #109, #110, #11

```
ux-ai-native/50-STEP-ANALYSIS-PLAN.md → research/analysis-methodology.mdx
ux-ai-native/56-SOURCE-CODE-DEEP-ANALYSIS.md → research/source-analysis.mdx
ux-ai-native/60-TWO-SCENARIOS-GAME-ANALOGY.md → research/game-analogy.mdx
ux-ai-native/61-AI-NATIVE-TERMINAL-DIAGRAMS.md → research/architecture-diagrams.mdx
ux-ai-native/62-AI-NATIVE-TERMINAL-GIANTS-QUOTE.md → research/giants-quote.mdx
ux-ai-native/63-AI-NATIVE-TERMINAL-ARCHITECTURE-SUCCESS-FACTORS.md → research/success-factors.mdx
ux-ai-native/64-AI-NATIVE-TERMINAL-PRIOR-ART.md → research/prior-art.mdx
monoterm-guide/10-ai-cli-framework-pairing.md → research/ai-cli-pairing.mdx
```

### Batch G: Transparency Remaining (11 files)

Files: #55, #67, #69, #71, #72, #75, #76, #82, #84, #87, #88, #89, #98, #99

```
monokinetics-transparency/00-overview.md → transparency/overview.mdx
02-git-viewers/chapter-09-stash-reflog-qed.md → transparency/git-viewers/stash-reflog.mdx
02-git-viewers/chapter-11-commit-graph-architecture-qed.md → transparency/git-viewers/commit-graph.mdx
02-git-viewers/chapter-13-prove-viewer-status-qed.md → transparency/git-viewers/prove-status.mdx
02-git-viewers/chapter-14-research-viewer-gittab-qed.md → transparency/git-viewers/research-gittab.mdx
02-git-viewers/chapter-17-heatmap-color-qed.md → transparency/git-viewers/heatmap-color.mdx
02-git-viewers/chapter-18-final-integration-synthesis-qed.md → transparency/git-viewers/synthesis.mdx
04-wiki-viewers/chapter-22-wiki-onit-viewer-data-model.md → transparency/wiki-viewers/onit-data.mdx
04-wiki-viewers/chapter-24-wiki-onit-viewer-interaction.md → transparency/wiki-viewers/onit-interaction.mdx
04-wiki-viewers/chapter-27-wiki-prepare-viewer-data.md → transparency/wiki-viewers/prepare-data.mdx
04-wiki-viewers/chapter-28-wiki-prepare-viewer-render.md → transparency/wiki-viewers/prepare-render.mdx
04-wiki-viewers/chapter-29-wiki-prepare-viewer-navigation.md → transparency/wiki-viewers/prepare-nav.mdx
06-commit-graph-upgrade/chapter-36-upgrade-plans.md → transparency/commit-graph/implementation.mdx
06-commit-graph-upgrade/chapter-37-upgrade-impact.md → transparency/commit-graph/impact.mdx
```

### Batch H: Miscellaneous Remaining (5 files)

Files: #7, #9, #12, #112, #113

```
monoterm-guide/07-monokinetics-and-monolex.md → philosophy/monolex-vision.mdx
monoterm-guide/09-cursor-pattern-pseudo-bsu.md → terminal/cursor-pattern.mdx
monoterm-guide/11-monoterm-compatibility-matrix.md → terminal/compatibility.mdx
architecture-docs/02-data-flow.md → architecture/data-flow.mdx
architecture-docs/ARCHITECTURE-VERSION.md → architecture/version-history.mdx
```

***

## Quality Verification Checklist

After each file conversion, verify:

```
[ ] No file paths or line numbers (atomic_state.rs:142)
[ ] No code snippets (except user commands like npm, git)
[ ] No implementation details (cache, buffer, feed, hash)
[ ] 70%+ ASCII diagrams
[ ] Key terms present (Rust, Tauri, Alacritty, WebGL, etc.)
[ ] Grandmother test passed
[ ] Mintlify MDX format valid
```

***

## Reference Paths

* **SKILL.md**: `/Users/macbook/Projects/monolex/monolex/.claude/skills/monolex-docs-maker/SKILL.md`
* **GLOSSARY.md**: `/Users/macbook/Projects/monolex/monolex/.claude/skills/monolex-docs-maker/GLOSSARY.md`
* **Phase 2 Source**: `/Users/macbook/Projects/monolex/monolex/.claude/skills/monolex-architect/docs/`
* **Phase 3 Target**: `/Users/macbook/Projects/monolex/monolex-docs-draft/`

***

## Update History

| Date       | Session              | Progress                                                       |
| ---------- | -------------------- | -------------------------------------------------------------- |
| 2026-01-18 | Initial              | Created master tracker, 49% complete (57/116)                  |
| 2026-01-20 | Concurrency Complete | Added & converted Parts 4&5, Batch C 100% complete (7/7 files) |

***

*Last Updated: 2026-01-20*